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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46928677_46990720_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46928677 - 46990720
Intron Length:
62044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GGTGGCTTCATT
Flanking Amino Acid:
CNFGFAALLQGGFSTVFLVR
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.8
35.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
40.1
-1.1
3
53.8
43.5
Minor BPS
46.2
-0.2
2.2
64.89
45.9

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014748
46928634 - 47027820
99187