About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_469830_469874_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
469830 - 469874
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCGACGAGG
5'SS Class:
weak_major
3'SS Sequence:
GAGGAGGAGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGAGGAA
U12 Branch Point Sequence:
GGAGGAGGAAGA
Flanking Amino Acid:
SPAPSLPSSAGEEEAASPAR
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.4
52.9
44.5
Major BPS
37.2
-0.8
1.3
23.2
34.8
Major PPT
40.2
-0.5
1.1
22.7
35.7
Minor 5ss
21.9
-3.2
3.8
30.8
42.9
Minor BPS
27.3
-1.7
2.2
31.59
35

Associated Gene:

Gene:
NEUROG2
Ensembl Gene ID:
ENSAPLG00000029891
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027730
468248 - 469971
1724