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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46990840_46991961_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46990840 - 46991961
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
CTGTGCTCAAGT
Flanking Amino Acid:
NICKREITIMKELSGHKNIV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
93.2
0.97
0.6
92.1
18.5
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
47.3
-0.1
2.3
67.53
49

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035326
46967941 - 47039696
71756
ENSAPLT00000028070
46967941 - 47028405
60465
ENSAPLT00000023833
46967941 - 47028405
60465
ENSAPLT00000014748
46928634 - 47027820
99187