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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46992068_46993488_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46992068 - 46993488
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATA
Flanking Amino Acid:
EVLILMEYCRAGQVVNQMNQ
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77
0.61
0.8
74.6
35.7
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
69.1
0.59
1.2
73.73
31.7

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035326
46967941 - 47039696
71756
ENSAPLT00000028070
46967941 - 47028405
60465
ENSAPLT00000023833
46967941 - 47028405
60465
ENSAPLT00000014748
46928634 - 47027820
99187