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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46993632_46993922_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46993632 - 46993922
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TCTGTGTCAACT
Flanking Amino Acid:
KTPIVHRDLKVENILLNDNG
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.8
36.4
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
66.4
0.37
1
64
36.4
Minor 5ss
41
-1
3.1
58.1
46.3
Minor BPS
47.8
-0
2.3
71.07
46.1

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014748
46928634 - 47027820
99187
ENSAPLT00000035326
46967941 - 47039696
71756
ENSAPLT00000028070
46967941 - 47028405
60465
ENSAPLT00000023833
46967941 - 47028405
60465