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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47002920_47005045_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
47002920 - 47005045
Intron Length:
2126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTAC
5'SS Class:
weak_major
3'SS Sequence:
CTTAATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTTGTCTTAATA
Flanking Amino Acid:
PGAFGNRGQKGTPRPGNGQE
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
71
35.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.8
0.6
0.9
69.4
40.1
Minor 5ss
57.5
0.25
2
69.7
41.2
Minor BPS
71.1
0.66
1.3
75.34
36.5

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035326
46967941 - 47039696
71756
ENSAPLT00000028070
46967941 - 47028405
60465
ENSAPLT00000023833
46967941 - 47028405
60465
ENSAPLT00000014748
46928634 - 47027820
99187