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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47005225_47006251_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47005225 - 47006251
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTC
5'SS Class:
major
3'SS Sequence:
TTTCCAAATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCTTTCCAAATA
Flanking Amino Acid:
PSVQEAYIQQYQQAMHQQMV
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
66.8
37.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
73.6
0.53
1
67.1
37.3
Minor 5ss
33.3
-1.9
3.7
50
46.5
Minor BPS
50.3
0.01
2
66.95
40.3

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028070
46967941 - 47028405
60465
ENSAPLT00000023833
46967941 - 47028405
60465
ENSAPLT00000014748
46928634 - 47027820
99187
ENSAPLT00000035326
46967941 - 47039696
71756