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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47007153_47009081_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47007153 - 47009081
Intron Length:
1929

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTGACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATGAACT
Flanking Amino Acid:
MVADSPYAANRSGIPDAETI
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
73.5
0.53
1
65.1
40.4
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
67.3
0.62
1.7
88.41
35.5

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035326
46967941 - 47039696
71756
ENSAPLT00000028070
46967941 - 47028405
60465
ENSAPLT00000023833
46967941 - 47028405
60465
ENSAPLT00000014748
46928634 - 47027820
99187