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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47027817_47039614_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47027817 - 47039614
Intron Length:
11798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTACTAACA
Flanking Amino Acid:
PFGAAPFPSKHAWRMREISI
Intron Amino Acid Position:
1139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
66.2
37.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
36.9
-1.5
3.4
55.6
42.7
Minor BPS
62.7
0.39
1.9
81.2
33.6

Associated Gene:

Gene:
BMP2K
Ensembl Gene ID:
ENSAPLG00000014134
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035326
46967941 - 47039696
71756