Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47099953_47100084_F

Intron Information:

Intron Rank:

143332

Intron Class:

major

Intron Phase:

Intron Coordinates:

47099953 - 47100084

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTCAGTTCT

5'SS Class:

major

3'SS Sequence:

TTTATTTTAACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TTTATTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.3

75.2

35.7

Major BPS

77.8

0.69

78.2

31.8

Major PPT

84.3

0.77

0.9

81.1

35.2

Minor 5ss

-1.1

2.8

51.9

38.5

Minor BPS

77.6

0.86

1.1

83.48

30.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027212

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033657

47099786 - 47101510

1725