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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47100198_47100852_F

Intron Information:

Intron Rank:
143333
Intron Class:
major
Intron Phase:
Intron Coordinates:
47100198 - 47100852
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTGG
5'SS Class:
major
3'SS Sequence:
TTCTCTACCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CATTCTCTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
60.6
46.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
77.8
0.62
0.8
70.2
35
Minor 5ss
41.9
-0.9
3.2
55.4
48.8
Minor BPS
49.6
-0
2
63.81
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027212
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033657
47099786 - 47101510
1725