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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4718977_4720397_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4718977 - 4720397
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTTCCTTATCT
Flanking Amino Acid:
LRQKFKEMNADAVFAFQLRN
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
84.9
26.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.5
0.71
0.8
74.7
36
Minor 5ss
32.1
-2
2.8
39.2
40.5
Minor BPS
72.3
0.78
1.6
83.49
43.8

Associated Gene:

Gene:
PAPSS1
Ensembl Gene ID:
ENSAPLG00000006191
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006460
4707531 - 4751782
44252