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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4720534_4723183_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4720534 - 4723183
Intron Length:
2650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GATTTTTCATTT
Flanking Amino Acid:
TTCKEHPYIKMVMEQGNWLV
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.8
83.1
28.7
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
48.4
-0
1.7
65.48
39.6

Associated Gene:

Gene:
PAPSS1
Ensembl Gene ID:
ENSAPLG00000006191
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006460
4707531 - 4751782
44252