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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4723390_4725715_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4723390 - 4725715
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGATAAT
U12 Branch Point Sequence:
CTGTGGATAATG
Flanking Amino Acid:
QCLHFDCLLDGGVINLSVPI
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
54.9
0.12
1.4
58
45.4
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
39.9
-0.9
2.5
47.3
46.4

Associated Gene:

Gene:
PAPSS1
Ensembl Gene ID:
ENSAPLG00000006191
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006460
4707531 - 4751782
44252