Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4725828_4727677_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4725828 - 4727677

Intron Length:

1850

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTGT

5'SS Class:

major

3'SS Sequence:

GTTTCTTTGCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

CAACTTTTATCT

Flanking Amino Acid:

ESLLTLEINKVDMQWVQVLA

Intron Amino Acid Position:

381

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

41.4

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

67.2

0.39

1.2

67.7

42.7

Minor 5ss

44.6

-0.6

3.1

65.1

46.2

Minor BPS

49.6

0.05

1.6

62.75

41.5

Associated Gene:

Gene:

PAPSS1

Ensembl Gene ID:

ENSAPLG00000006191

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006460

4707531 - 4751782

44252