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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47368951_47370282_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47368951 - 47370282
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATAAAGT
Flanking Amino Acid:
IQEKWYTPIKGRLDALWALL
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.6
41.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.2
0.54
0.9
68.2
37.6
Minor 5ss
43.9
-0.7
3.2
65.5
45.6
Minor BPS
52.3
0.15
2.2
78
44

Associated Gene:

Gene:
ANTXR2
Ensembl Gene ID:
ENSAPLG00000014640
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015280
47367610 - 47431611
64002