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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47370451_47373952_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47370451 - 47373952
Intron Length:
3502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCC
5'SS Class:
major
3'SS Sequence:
TGTCTTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTGTCTTTACTT
Flanking Amino Acid:
RGVGGIKRMEVRWGDKGSTE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
36.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74
0.54
0.9
73.8
35.8
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
62.1
0.46
1.6
74.76
43.2

Associated Gene:

Gene:
ANTXR2
Ensembl Gene ID:
ENSAPLG00000014640
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015280
47367610 - 47431611
64002