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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4740416_4740830_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4740416 - 4740830
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCAAT
U12 Branch Point Sequence:
TCAATCTTAGTA
Flanking Amino Acid:
ITSFISPYTQDRNNARRIHE
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
68.1
0.45
1.3
76.8
34.3
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
52.8
0.08
1.6
60.34
40

Associated Gene:

Gene:
PAPSS1
Ensembl Gene ID:
ENSAPLG00000006191
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006460
4707531 - 4751782
44252