Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47467161_47489775_F

Intron Information:

Intron Rank:

141008

Intron Class:

major

Intron Phase:

Intron Coordinates:

47467161 - 47489775

Intron Length:

22615

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

AATCAAATTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TTATTGTTAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

35.3

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

65.4

0.35

55.8

42.6

Minor 5ss

-1.4

3.3

49.5

41.1

Minor BPS

57.2

0.22

2.1

73.09

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030884

47465411 - 47490618

25208