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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47505702_47534045_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47505702 - 47534045
Intron Length:
28344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CATTGTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CAATAATTAATA
Flanking Amino Acid:
MLLASTGKEL
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.6
0.62
0.9
69.5
41.3
Minor 5ss
37.1
-1.5
3.2
54.8
42.5
Minor BPS
50.3
0.01
1.8
59.9
39.5

Associated Gene:

Gene:
CFAP299
Ensembl Gene ID:
ENSAPLG00000015021
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015647
47505380 - 47669001
163622