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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4760843_4764386_F

Intron Information:

Intron Rank:
130795
Intron Class:
major
Intron Phase:
Intron Coordinates:
4760843 - 4764386
Intron Length:
3544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TCTTCCCTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
75.8
40
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
37.6
-1.4
3.1
50.5
45.5
Minor BPS
48.7
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020217
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020101
4759996 - 4765041
5046