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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47657813_47666152_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47657813 - 47666152
Intron Length:
8340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
CGCATTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCCCTTAAAACT
Flanking Amino Acid:
NPYAAEVQTMLFYNWNKNVV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
73.5
0.53
0.9
67.2
37.9
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
45.1
-0.2
1.9
60.99
43.3

Associated Gene:

Gene:
CFAP299
Ensembl Gene ID:
ENSAPLG00000015021
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038128
47533660 - 47669001
135342