About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47666283_47668905_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47666283 - 47668905
Intron Length:
2623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTATCTGTAATA
Flanking Amino Acid:
DGKIINVNPKVYPGDNTTRT
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
55.4
0.17
2
67.35
40

Associated Gene:

Gene:
CFAP299
Ensembl Gene ID:
ENSAPLG00000015021
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030607
47533660 - 47669087
135428
ENSAPLT00000015647
47505380 - 47669001
163622
ENSAPLT00000038128
47533660 - 47669001
135342