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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_476765_476885_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
476765 - 476885
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TCTTGCCTATTT
Flanking Amino Acid:
CFYSANGTEQTERDNSFYNM
Intron Amino Acid Position:
1791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
78.3
0.64
0.9
69.3
40.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
47.4
-0.1
2.3
72.09
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625