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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47683923_47694607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47683923 - 47694607
Intron Length:
10685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATATTCTTATCT
Flanking Amino Acid:
TVRGFRPLAAGSPGSQEPYV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
69.5
0.69
1.5
82.99
37.9

Associated Gene:

Gene:
BMP3
Ensembl Gene ID:
ENSAPLG00000015075
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015703
47683072 - 47712633
29562