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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47701727_47712146_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
47701727 - 47712146
Intron Length:
10420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCACT
5'SS Class:
major
3'SS Sequence:
CTTCAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTCTTCAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.3
37.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.8
0.67
0.9
72.6
36.3
Minor 5ss
36.6
-1.5
2.9
50
45.9
Minor BPS
77.2
0.93
1.4
92.06
30.7

Associated Gene:

Gene:
BMP3
Ensembl Gene ID:
ENSAPLG00000015075
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015703
47683072 - 47712633
29562