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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47721417_47727718_F

Intron Information:

Intron Rank:
129395
Intron Class:
major
Intron Phase:
Intron Coordinates:
47721417 - 47727718
Intron Length:
6302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.3
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
76.2
32.4
Minor 5ss
44.9
-0.6
3
64.1
47.4
Minor BPS
60.3
0.18
1.9
73.18
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019586
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041952
47718466 - 47731989
13524