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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47738006_47747969_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47738006 - 47747969
Intron Length:
9964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
CCCCACTGAATT
Flanking Amino Acid:
PDKGASSACESRQSRGGVKQ
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
62
0.3
1
53
34.1
Major PPT
83.3
0.75
0.7
76.4
32.2
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
47.7
-0
1.7
58.92
44.4

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025907
47737437 - 47880095
142659