About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47748015_47757002_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47748015 - 47757002
Intron Length:
8988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATGTCCTTTATT
Flanking Amino Acid:
GGVKQSTKQKTVLFRTLAKE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.3
36.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
50.9
0.03
2.3
65.5
45.7
Minor BPS
69.9
0.71
1.6
82.11
39.4

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025907
47737437 - 47880095
142659