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Intron Name: Anas_platyrhynchos_platyrhynchos_4_4785215_4807850_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4785215 - 4807850

Intron Length:

22636

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

AGGTCCTGAATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.8

38.7

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

1.1

0.4

13.8

Minor 5ss

35.7

-1.6

48.8

Minor BPS

64.4

0.45

1.4

67.71

38.6

Associated Gene:

Gene:

SGMS2

Ensembl Gene ID:

ENSAPLG00000007057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007329

4785137 - 4814100

28964