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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47856072_47862976_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47856072 - 47862976
Intron Length:
6905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTCTGTACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.2
30.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.6
0.6
0.9
73.7
36.9
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
47.7
-0.1
2.3
72.3
45

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019696
47855827 - 47878282
22456