About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47863160_47864530_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47863160 - 47864530
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
GGTGATTTATCC
Flanking Amino Acid:
LVPNVDYYPDRTYIFTFLLS
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
84.9
0.78
0.8
79.6
32.4
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
47
-0.2
1.8
56.66
41.8

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025907
47737437 - 47880095
142659
ENSAPLT00000019696
47855827 - 47878282
22456
ENSAPLT00000015770
47820565 - 47878282
57718
ENSAPLT00000035654
47821462 - 47877602
56141
ENSAPLT00000028629
47851299 - 47879839
28541