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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47869911_47870008_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47869911 - 47870008
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
GTGCTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TCTGACTTGATT
Flanking Amino Acid:
LAQQLTHIELERLNYIGPEE
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
78.7
30.8
Major BPS
75
0.62
1
65.3
41.5
Major PPT
78.8
0.65
0.9
77.1
37.1
Minor 5ss
43.3
-0.7
3.1
64.1
41.5
Minor BPS
60
0.39
1.7
75.59
41.7

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028629
47851299 - 47879839
28541
ENSAPLT00000025907
47737437 - 47880095
142659
ENSAPLT00000019696
47855827 - 47878282
22456
ENSAPLT00000015770
47820565 - 47878282
57718
ENSAPLT00000035654
47821462 - 47877602
56141