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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47870084_47871096_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47870084 - 47871096
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
ATTACAGTAAAA
Flanking Amino Acid:
VQKDPLDNDKSCYGDRKKTR
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.9
35
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
35.2
-1.7
2.7
43.3
43.5
Minor BPS
46.5
-0.2
2.3
65.48
40.1

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015770
47820565 - 47878282
57718
ENSAPLT00000035654
47821462 - 47877602
56141
ENSAPLT00000028629
47851299 - 47879839
28541
ENSAPLT00000025907
47737437 - 47880095
142659
ENSAPLT00000019696
47855827 - 47878282
22456