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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47872396_47873700_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47872396 - 47873700
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCATGCTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATTATTTACAT
Flanking Amino Acid:
VKTAKFDILEHQMDPSSNFY
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.1
0.56
0.9
69.5
36.5
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
48.6
-0
1.9
67.09
43.5

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025907
47737437 - 47880095
142659
ENSAPLT00000019696
47855827 - 47878282
22456
ENSAPLT00000015770
47820565 - 47878282
57718
ENSAPLT00000035654
47821462 - 47877602
56141
ENSAPLT00000028629
47851299 - 47879839
28541