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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47876145_47877362_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47876145 - 47877362
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTACTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAGCAT
U12 Branch Point Sequence:
TCCTGTTCTACT
Flanking Amino Acid:
RLPNGHVNFEKFWELAKQVS
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
54.5
0.11
1.4
65.8
41
Major PPT
73.1
0.52
1
69.2
36.8
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
44.7
-0.3
2.2
63.49
47

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015770
47820565 - 47878282
57718
ENSAPLT00000035654
47821462 - 47877602
56141
ENSAPLT00000028629
47851299 - 47879839
28541
ENSAPLT00000025907
47737437 - 47880095
142659
ENSAPLT00000019696
47855827 - 47878282
22456