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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47878249_47879406_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47878249 - 47879406
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
CTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTTCTTTACAT
Flanking Amino Acid:
HIEKDRWKTLRSTLLGRV*
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
64.3
0.53
1.7
80.63
41.5

Associated Gene:

Gene:
RASGEF1B
Ensembl Gene ID:
ENSAPLG00000015111
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028629
47851299 - 47879839
28541
ENSAPLT00000025907
47737437 - 47880095
142659