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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47904272_47906769_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47904272 - 47906769
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGACT
5'SS Class:
major
3'SS Sequence:
TTTGTGCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AATATTGCAAAT
Flanking Amino Acid:
MLSFCLFAYRSLDKMGNLS
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.6
35.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
66.8
0.38
1
59.2
42.1
Minor 5ss
28.8
-2.4
3.2
40.4
45.5
Minor BPS
40.9
-0.6
2.1
57.46
39

Associated Gene:

Gene:
PRKG2
Ensembl Gene ID:
ENSAPLG00000015473
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016185
47904153 - 47932305
28153