Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47907292_47913724_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

47907292 - 47913724

Intron Length:

6433

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTA

5'SS Class:

strong_major

3'SS Sequence:

TGATTGAAACCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TGCTTTTTGATT

Flanking Amino Acid:

FEKSRVQKDFSEKKLITDAL

Intron Amino Acid Position:

184

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.8

84.1

30.2

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

57.4

0.17

1.1

49.4

Minor 5ss

47.4

-0.3

2.8

64.4

Minor BPS

64.4

0.54

1.2

74.37

37.2

Associated Gene:

Gene:

PRKG2

Ensembl Gene ID:

ENSAPLG00000015473

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043140

47906770 - 47933892

27123

ENSAPLT00000016185

47904153 - 47932305

28153