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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47928539_47929248_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47928539 - 47929248
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTAACG
Flanking Amino Acid:
GILVYELLTGSPPFSGADQM
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
56.1
0.05
2.2
72
41.1

Associated Gene:

Gene:
PRKG2
Ensembl Gene ID:
ENSAPLG00000015473
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043140
47906770 - 47933892
27123
ENSAPLT00000016185
47904153 - 47932305
28153