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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47971599_47972010_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
47971599 - 47972010
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCAAAACCA
5'SS Class:
weak_major
3'SS Sequence:
TGATCGCATGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGCCCTCAGAC
Flanking Amino Acid:
GSSSIEPPWGHSIGSIVSKI
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.2
0.05
1.3
50.7
39.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
47.7
-0.1
1.7
51.3
42.8
Minor 5ss
22.5
-3.2
3.8
27.7
36.9
Minor BPS
48.2
-0.1
1.9
61.95
42.8

Associated Gene:

Gene:
PKD2
Ensembl Gene ID:
ENSAPLG00000002737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002806
47970265 - 47980193
9929