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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47975878_47976581_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47975878 - 47976581
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAACC
Flanking Amino Acid:
IDDFSTFQDCIFTQFRIILG
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
80.8
0.69
1
82.2
33.3
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
77.6
0.85
1.4
86.43
30.8

Associated Gene:

Gene:
PKD2
Ensembl Gene ID:
ENSAPLG00000002737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002806
47970265 - 47980193
9929