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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47976764_47978026_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47976764 - 47978026
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATCAACA
Flanking Amino Acid:
AVTVFFVWIKLFKFVNFNRT
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
71.6
40.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.5
0.64
0.9
74.5
34
Minor 5ss
40
-1.1
2.8
51.5
44.9
Minor BPS
57.3
0.23
1.8
74.42
36.5

Associated Gene:

Gene:
PKD2
Ensembl Gene ID:
ENSAPLG00000002737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002806
47970265 - 47980193
9929