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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47978615_47978833_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47978615 - 47978833
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTTCCAAAT
Flanking Amino Acid:
NANINLFCVVRLLVEFPATG
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.3
37.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.7
0.53
1
67.8
36.8
Minor 5ss
45.8
-0.4
2.5
58.4
45.9
Minor BPS
50.4
0.09
1.9
77.89
38.3

Associated Gene:

Gene:
PKD2
Ensembl Gene ID:
ENSAPLG00000002737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002806
47970265 - 47980193
9929