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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47979059_47979355_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
47979059 - 47979355
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTATGTAGT
5'SS Class:
weak_major
3'SS Sequence:
ACTTCTGAACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TACTTCTGAACT
Flanking Amino Acid:
TAPFGLRNGTAWTYTNEKDL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
65.3
46
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
58.8
0.2
1
52.4
41.3
Minor 5ss
44.5
-0.6
2.6
55
42.6
Minor BPS
70.5
0.72
1.4
81.77
39.5

Associated Gene:

Gene:
PKD2
Ensembl Gene ID:
ENSAPLG00000002737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002806
47970265 - 47980193
9929