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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_47979607_47979954_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47979607 - 47979954
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCTTCCTCCACA
Flanking Amino Acid:
TLSTMDDFWKFTEGPLLDGL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
70.6
36.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
81.6
0.71
0.7
76.2
26
Minor 5ss
37.4
-1.4
3
48.4
47.1
Minor BPS
61.5
0.36
2
75.44
42.2

Associated Gene:

Gene:
PKD2
Ensembl Gene ID:
ENSAPLG00000002737
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002806
47970265 - 47980193
9929