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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_479840_480530_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
479840 - 480530
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
TNVAVDRILLGLLDLGFEDF
Intron Amino Acid Position:
1572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
69.3
38.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.7
0.78
0.9
87.1
23.9
Minor 5ss
38.7
-1.3
3.1
43.2
44.5
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013183
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013744
474056 - 496680
22625