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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48002078_48002155_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48002078 - 48002155
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
TGCTCCCCACAG
Flanking Amino Acid:
STRRNQTQIKKEEADEQSAV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
68.9
0.43
0.9
61.6
35
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
40.5
-0.8
2.1
46.57
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003038
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003069
47998727 - 48003132
4406