About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48030593_48031179_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48030593 - 48031179
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTCACTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACT
Flanking Amino Acid:
ACPSTKDYERVCGTDNKTYD
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.4
0.59
0.8
74.2
30.9
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
65.3
0.56
1.7
82.67
39.4

Associated Gene:

Gene:
SPARCL1
Ensembl Gene ID:
ENSAPLG00000003209
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003262
48023336 - 48035707
12372