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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_48033245_48034137_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48033245 - 48034137
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TATCACTGAAAT
Flanking Amino Acid:
FYQLDQHPADRSLTHSELAP
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
78.3
0.7
1
80
32.1
Major PPT
83.7
0.76
0.8
80.8
31.2
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
54.3
0.21
1.8
74.94
40.4

Associated Gene:

Gene:
SPARCL1
Ensembl Gene ID:
ENSAPLG00000003209
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003262
48023336 - 48035707
12372